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Symmetrical inversion of genes encompassing the oriC does not change gene location with respect to the leading and lagging DNA strands Eisen et al. Each of these discrete events is caused by a double-strand break involving at least two different locations, followed by a re-ligation of the broken ends to produce a new chromosomal arrangement or context at the ends Hastings et al.
Discovery of statistically significant post-translational modification motifs. Acquisition of mobile genetic elements through HGT in S taphylococcus aureus contributes to its genotypic and phenotypic diversity Deurenberg et al.
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Genome-wide detection of spontaneous chromosomal rearrangements in bacteria. Though tools for mapping of paired-end information for SV calling are plenty, however, each may have their own limitations, advantages and overheads of usage.
Origins of the E. This type of SV is particularly more evident and common in multi-chromosomal bacteria, where the smaller secondary chromosomes evolve more rapidly Morrow and Cooper, Dynamics of IS-related genetic rearrangements in resting Escherichia coli K Inversions are variations that involve a rearrangement of the orientation of a genomic segment Johnson, Related articles in Web of Science Google Scholar.
Mobile elements create structural variation: The deciphering of the genomic variability in E. The availability of a gamut of new technologies for high-throughput nucleotide sequencing have opened up new opportunities toward understanding genome structure and their variations. But, SVs have not been widely explored and studied in prokaryotic genomes as compared with eukaryotes Kresse et al.
The symmetrical organization of bacterial chromosome along the replichores Eisen et al. Conceptual overview of functional consequences of SVs. Insights into structural variations and genome rearrangements in prokaryotic genomes Vinita Periwal.
Modularized framework for detecting SVs. Linking sequence patterns and functionality of alpha-helical antimicrobial peptides. Large inversions, which disturb the symmetry around the constrained chromosomal regions, i.
A number of studies have highlighted the molecular predispositions that enable SVs to occur. Most of the SVs such as inversions, deletions and translocations have been largely studied in context of genetic diseases in eukaryotes. Coordinated phenotype switching with large-scale chromosome flip-flop inversion observed in bacteria.
High-resolution mapping of copy-number sva with massively parallel sequencing.
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Published by Oxford University Press. It has been tested on the smallest bacterial genomes: The mechanisms of SV formation appears to be similar in prokaryotes and eukaryotes Hastings et al.
Besides insertions, inversions and deletion events, it also has the capability to detect mobile element insertions. SVs introduce variability in gene copy number, position, orientation and, in several cases, combinations of these events Freeman et al.
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In the following section, we review some of these algorithms and techniques with their potential applications and limitations. The technique has been efficiently used to introduce insertions, deletions, inversions and translocations in E.
In another study, experimental deletion of the mutS gene of E.